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Laboratory Information System Developer

Organization
National Cancer Institute, Center for Cancer Research
Job Location
Building 10, 10 Center Drive
Bethesda, MD 20814
United States
Job Description

Specific duties will include:
-Developing and presenting iterations of an information system based on cBioportal with the following capabilities:
-Store clinically relevant information (cancer type, metastatic site, etc).
-Link components to specific cases (eg previously resulted reports, scanned slide images, etc).
-Make clinical case components available for review during clinical conferences.
-Extract information for analytical purposes including quality assessment metrics such as turnaround time, rates of specific mutations in a subset of specimens, etc.
-Populate raw genomics data generated by the lab, ability to filter, query and linking with patient records.
-Serving as a member of a team of computer/bioinformatics scientists and engineers that design, develop and/or modify existing software to help solve scientific computing problems.
-Close interaction with staff to identify and implement their information system needs.
-Assisting in improving specimen and signout workflow.
-Managing interfacing with laboratory instrumentation.

Requirements

To be considered for this position, you must minimally meet the knowledge, skills, and abilities listed below:
-Possession of at least a Master's degree in a related field (Computer Science/ Bioinformatics) from an accredited college or university according to the Council for Higher Education Accreditation (CHEA) (foreign degrees must be evaluated for U.S. equivalency).
-Three (3) years of relevant experience.
-Experience or exposure with developing laboratory information systems.
-Ability to communicate effectively with scientific personnel and administrative staff.
-Ability to multitask, prioritize, and meet deadlines in multiple complex projects.
-Ability to work independently and complete tasks with minimal supervision.
-Ability to meet regulatory requirements.

Candidates with these desired skills will be given preferential consideration:
-Extensive prior experience with laboratory information system development.
-Knowledge of backend working of cBioPortal is preferred.
-Knowledge of laboratory information system College of American Pathologists requirements.
-Experience with R, Python, JAVA, JavaScript, D3, REST API, HTML5, CSS, UI design, Bootstrap, latest web technologies, Docker/Singularity.
-Experience with Database design and implementation e.g. MySQL.
-Experience with machine learning.
-Basic working knowledge of Next Generation Sequencing data e.g. RNAseq, ExomeSeq, etc.

How to Apply

Please send your resume and contact information to [email protected] and cc [email protected].

About Our Organization

The Laboratory of Pathology, National Cancer Institute, Bethesda, MD is seeking a software developer who will be responsible for developing, modifying and maintaining a laboratory information system in coordination with the scientific and technologist staff. As part of the NCI-COMPASS program the Laboratory of Pathology currently has various genomic assays and is in the process of developing an expansive multiomics program which includes clinical-grade whole genome sequencing, whole transcriptome sequencing, and other genomic characterization modalities. A centralized way of collecting, extracting, and presenting this very large volume of data is needed in order to maximize the efficiency of clinical and research work and to meet regulatory requirements.